Yes you can add them if you choose. I rarely use the home directories myself since it's headless.Finally, of course a small question. Can the Amahi/Fedora created Home directories be added to Greyhole (to duplicate the data across 2 drives)? If not, no biggy!
EDIT: Found this example Greyhole conf file that indicates it should be directories.
http://code.google.com/p/greyhole/sourc ... conf?r=431